引用本文:[点击复制]
[点击复制]
【打印本页】【下载PDF全文】 查看/发表评论下载PDF阅读器关闭

←前一篇|后一篇→

过刊浏览    高级检索

本文已被:浏览次   下载 本文二维码信息
码上扫一扫!
人类1号染色体可变剪接与普通剪接基因同义密码子的使用分析I.同义密码子偏爱使用分析
0
()
摘要:
人类1号染色体可变剪接(选择性剪接)基因344非冗余蛋白质编码序列(188183密码子)和普通剪接(非可变剪接)基因的386蛋白质编码序列(223116密码子)被用于研究人类密码子使用偏爱模式.全部密码子使用数据分析表明,人类可变剪接基因密码子的偏爱水平显著高于普通剪接基因.在人类1号染色体基因中,密码子第三位置的G C含量有很大的异质性(0.24~0.95),并且可变剪接基因密码子第三位置平均G C含量(64.66%)大于普通剪接基因(59.97%).Nc值对GC3s图显示密码子偏爱使用除了受核苷酸组成制约外,其它的因子可能也影响密码子的使用变化.此外,可变剪接基因中以G 或C结尾的密码子比普通剪接基因出现的频率高.密码子使用的差异可能是由可变剪接基因pre-mRNA特有的结构特征和多种剪接模式决定的.
关键词:  可变剪接  普通剪接  密码子使用  人类  alternative splicing  common splicing  codon usage  human  人类  染色体  可变剪接  基因  同义密码子  使用分析  Chromosome  Human  Genes  Codon Usage  Analysis  differences  structural characteristics  content  silent  codon usage bias  position  heterogeneity  data analysis  chromosome
DOI:
基金项目:中国博士后科学基金
Synonymous Codon Usage of Both Alternatively and Commonly Spliced Genes in Human Chromosome 1 I:Synonymous Codon Usage Bias Analysis
()
Abstract:
It is already clear that alternative splicing has an extremely important role in expanding the protein diversity. Comparative study of the codon usage patterns of alternatively and commonly spliced genes may thereby be necessary. In this paper, the patterns of codon usage bias of two kinds of human genes, alternatively spliced genes and commonly spliced genes, were formulated through analyzing 344 non-redundant protein coding sequences from alternatively spliced genes (188183 codons) and 386 from commonly spliced genes (223116 codons) in human chromosome (1. Overall) codon usage data analysis indicated that the alternatively spliced genes showed a stronger codon usage bias than commonly spliced genes. Very extensive heterogeneity of G C content in silent third codon position (GC3s) was evident among these genes, and GC3s content of alternatively spliced genes was higher than that of commonly spliced genes. G- or C-ending codons were more abundant in alternatively spliced genes than commonly spliced genes in human chromosome 1. The causation of differences created could be explained by pre-mRNA structural characteristics of alternatively spliced genes influencing their codon usage bias.
Key words:  alternative splicing,common splicing,codon usage,human

用微信扫一扫

用微信扫一扫